Mercurial > repos > stephenshank > hyphy_bgm
changeset 1:bb0068875ac6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
| author | stephenshank |
|---|---|
| date | Thu, 17 Jan 2019 14:05:18 -0500 |
| parents | 09b050170437 |
| children | d3422ecf4713 |
| files | hyphy_bgm.xml |
| diffstat | 1 files changed, 9 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/hyphy_bgm.xml Thu Jan 17 09:50:49 2019 -0500 +++ b/hyphy_bgm.xml Thu Jan 17 14:05:18 2019 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy0"> - <description>: Bayesian Graphical Models</description> + <description>- Detecting coevolving sites via Bayesian graphical models</description> <macros> <import>macros.xml</import> </macros> @@ -18,7 +18,7 @@ echo '$datatype.model' >> tool_params && #end if echo `pwd`/bgm_input.nhx >> tool_params && - echo '1' >> tool_params && + echo '$branch_subset' >> tool_params && echo '$chain_length' >> tool_params && echo '$burn_in' >> tool_params && echo '$sample' >> tool_params && @@ -69,6 +69,13 @@ </param> </when> </conditional> + <param name="branch_subset" type="select" label="Subset of branches to include substitutions from"> + <option value="1">All</option> + <option value="2">Internal</option> + <option value="3">Leaves</option> + <option value="4">Unlabeled</option> + <option value="5">Labeled</option> + </param> <param name="chain_length" type="integer" value="100000" min="0" max="1000000000" label="Length of MCMC chain"/> <param name="burn_in" type="integer" value="10000" min="0" max="1000000000" label="Number of samples to discard for burn-in"/> <param name="sample" type="integer" value="100" min="0" max="100" label="Number of steps to extract from chain sample"/>