Mercurial > repos > stephenshank > hyphy_absrel

annotate macros.xml @ 5:05481658ac36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
author stephenshank
date Thu, 17 Jan 2019 14:07:01 -0500
parents 3f81b18e2961
children 32b1229ad002
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daec257d4976 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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1 <?xml version="1.0"?>
daec257d4976 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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2 <macros>
5
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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3 <xml name="citations">
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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4 <citations>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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6 <yield/>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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7 </citations>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
diff changeset
8 </xml>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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9 <token name="@VERSION@">2.3.14</token>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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10 <xml name="requirements">
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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11 <requirements>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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12 <requirement type="package" version="@VERSION@">
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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13 hyphy</requirement>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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14 <yield/>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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15 </requirements>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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16 </xml>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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17 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
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daec257d4976 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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18 export HYPHY_PATH=`dirname \$HYPHY` &&
daec257d4976 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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19 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
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05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
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20 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
05481658ac36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 4
diff changeset
21 </macros>