Mercurial > repos > stemcellcommons > spp_tool

diff run_spp.R @ 16:ea38ad1cfb62 draft default tip

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Replace simplejson with json.
author stemcellcommons
date Thu, 10 Apr 2014 13:01:06 -0400
parents d4e99c087688
children
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--- a/run_spp.R	Tue Oct 15 15:43:49 2013 -0400
+++ b/run_spp.R	Thu Apr 10 13:01:06 2014 -0400
@@ -120,7 +120,7 @@
 	sep.peak <- NA # user-defined peak shift
 	exclude.min <- 10 # lowerbound of strand shift exclusion region
 	exclude.max <- NaN # upperbound of strand shift exclusion region
-	n.nodes <- NA # number of parallel processing nodes
+	n.nodes <- 32 # number of parallel processing nodes
 	fdr <- 0.01 # false discovery rate threshold for peak calling
 	npeak <- NA # threshold on number of peaks to call
 	temp.dir <- tempdir() # temporary directory