comparison spp_wrapper.py @ 16:ea38ad1cfb62 draft default tip

Replace simplejson with json.

15:a83ceb02d138

#Date: November 2012
#####################

import sys, subprocess, tempfile, shutil, glob, os, os.path, gzip
from galaxy import eggs
import pkg_resources
pkg_resources.require( "simplejson" )
import simplejson

CHUNK_SIZE = 1024

def main():
    options = simplejson.load( open( sys.argv[1] ) )
    output_narrow_peak = sys.argv[2]
    output_region_peak = sys.argv[3]
    output_peakshift_file = sys.argv[4]
    output_rdata_file = sys.argv[5]
    output_plot_file = sys.argv[6]

16:ea38ad1cfb62

#Date: November 2012
#####################

import sys, subprocess, tempfile, shutil, glob, os, os.path, gzip
from galaxy import eggs
import json

CHUNK_SIZE = 1024

def main():
    options = json.load( open( sys.argv[1] ) )
    output_narrow_peak = sys.argv[2]
    output_region_peak = sys.argv[3]
    output_peakshift_file = sys.argv[4]
    output_rdata_file = sys.argv[5]
    output_plot_file = sys.argv[6]