Mercurial > repos > stemcellcommons > spp_tool
comparison spp_wrapper.xml @ 16:ea38ad1cfb62 draft default tip
Replace simplejson with json.
| author | stemcellcommons |
|---|---|
| date | Thu, 10 Apr 2014 13:01:06 -0400 |
| parents | a83ceb02d138 |
| children |
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| 15:a83ceb02d138 | 16:ea38ad1cfb62 |
|---|---|
| 97 </data> | 97 </data> |
| 98 </outputs> | 98 </outputs> |
| 99 | 99 |
| 100 <configfiles> | 100 <configfiles> |
| 101 <configfile name="options_file"><% | 101 <configfile name="options_file"><% |
| 102 import simplejson | 102 import json |
| 103 %> | 103 %> |
| 104 #set $__options ={ 'experiment_name':str($experiment_name), 'chip_file':str($major_command.input_chipseq_file1) } | 104 #set $__options ={ 'experiment_name':str($experiment_name), 'chip_file':str($major_command.input_chipseq_file1) } |
| 105 | 105 |
| 106 #if str( $major_command.input_control_file1 ) != 'None': | 106 #if str( $major_command.input_control_file1 ) != 'None': |
| 107 #set $__options['input_file'] = str( $major_command.input_control_file1 ) | 107 #set $__options['input_file'] = str( $major_command.input_control_file1 ) |
| 163 #set $__options['savd'] = str( $major_command.save_rdata_file ) | 163 #set $__options['savd'] = str( $major_command.save_rdata_file ) |
| 164 #set $__options['savn'] = str( $major_command.save_narrowpeak_file ) | 164 #set $__options['savn'] = str( $major_command.save_narrowpeak_file ) |
| 165 #set $__options['savp'] = str( $major_command.save_plot_file ) | 165 #set $__options['savp'] = str( $major_command.save_plot_file ) |
| 166 #end if | 166 #end if |
| 167 | 167 |
| 168 ${ simplejson.dumps( __options ) } | 168 ${ json.dumps( __options ) } |
| 169 </configfile> | 169 </configfile> |
| 170 </configfiles> | 170 </configfiles> |
| 171 <tests> | 171 <tests> |
| 172 <!--none yet for spp--> | 172 <!--none yet for spp--> |
| 173 </tests> | 173 </tests> |