# HG changeset patch
# User stef
# Date 1415264241 18000
# Node ID 4fe3844a5fb03efadc0dbe6a1efaa9fec9b6ed74
# Parent  0e5432d467fa377a22b65bfa3995597f4e7dd6c5
Uploaded

diff -r 0e5432d467fa -r 4fe3844a5fb0 QDNAseq.xml
--- a/QDNAseq.xml	Fri Oct 31 07:17:46 2014 -0400
+++ b/QDNAseq.xml	Thu Nov 06 03:57:21 2014 -0500
@@ -2,10 +2,11 @@
   
   <requirements>
     
-    <!-- R 3.1.0 dependency will be used instead when available, now default R is used, see command -->
     <!-- <requirement type="package" version="3.1.0">R</requirement> -->
-    <!-- <requirement type="package" version="1.0.5">qdnaseq</requirement> -->
     <requirement type="package" version="0.1.18">samtools</requirement>
+    <requirement type="package" version="3.1.1">R</requirement>
+    <requirement type="package" version="1.0.5">qdnaseq</requirement>
+  
   </requirements>
 
   <description>Quantitative copy number abberation detection</description>
@@ -14,7 +15,6 @@
   <command interpreter="Rscript"> 
     QDNAseq.R 
     $qdnaseq_cfg
-    \$INSTALL_DIR
   </command>
 
   <stdio>