# HG changeset patch
# User stef
# Date 1409053753 14400
# Node ID 68a090cffb6f58cb1fc77a8ed82aaaaed0fd6179
# Parent  2d939f4c23feb64116188066f45eb1d776971ae8
Uploaded

diff -r 2d939f4c23fe -r 68a090cffb6f QDNAseq.R
--- a/QDNAseq.R	Tue Aug 26 07:38:40 2014 -0400
+++ b/QDNAseq.R	Tue Aug 26 07:49:13 2014 -0400
@@ -298,8 +298,8 @@
 		## COPYNUMBER PLOT
 		png( img_file_path, width=PLOT_WIDTH, height=PLOT_HEIGHT, res=PLOT_RES ); 
 			par( PAR_SET )
-			plot( copyNumbersSmooth[ ,sample ], main=paste(sample, ": CopyNumbers", sep="") ); 
-			mtext( paste( "(", binSizeString, " bins)" sep=""), 3 )
+			plot( copyNumbersSmooth[ ,sample ], main=paste(sample, ": CopyNumbers", sep="") ) 
+			mtext( paste( binSizeString, " bins" sep=""), 3 )
 			abline( h=c(-2,-1,1,2,3,4), lty=1, lwd=0.5, col="grey" )
 		dev.off()
 		
diff -r 2d939f4c23fe -r 68a090cffb6f tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Aug 26 07:38:40 2014 -0400
+++ b/tool_dependencies.xml	Tue Aug 26 07:49:13 2014 -0400
@@ -17,8 +17,10 @@
     -->
 
     <!-- environment variable not in use now -->
+    <!--
     <action type="set_environment">
         <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
     </action>
+    -->
     
 </tool_dependency>