# HG changeset patch
# User stef
# Date 1407423722 14400
# Node ID 2b729107cdb4ffcc0442805f1e660ae06f4efad1
# Parent  c962b56a2dd87ac9523438c5244acf6eb284de12
Uploaded

diff -r c962b56a2dd8 -r 2b729107cdb4 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Aug 06 06:19:30 2014 -0400
+++ b/tool_dependencies.xml	Thu Aug 07 11:02:02 2014 -0400
@@ -5,7 +5,6 @@
         <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
 
-    
     <!-- As soon as R 3_1_0 works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
     <!--
     <package name="R" version="3.1.0">
@@ -16,5 +15,9 @@
         <repository name="package_qdnaseq_1_0_5" owner="stef"/>
     </package>
     -->
+
+    <action type="set_environment">
+        <environment_variable name="TOOL_DIR" action="prepend_to">$INSTALL_DIR</environment_variable>
+    </action>
     
 </tool_dependency>