Mercurial > repos > stef > qdnaseq

diff tool_dependencies.xml @ 57:2b729107cdb4 draft

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Uploaded
author stef
date Thu, 07 Aug 2014 11:02:02 -0400
parents 1ca13feb557a
children 46161d4fb9cb
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--- a/tool_dependencies.xml	Wed Aug 06 06:19:30 2014 -0400
+++ b/tool_dependencies.xml	Thu Aug 07 11:02:02 2014 -0400
@@ -5,7 +5,6 @@
         <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
 
-    
     <!-- As soon as R 3_1_0 works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
     <!--
     <package name="R" version="3.1.0">
@@ -16,5 +15,9 @@
         <repository name="package_qdnaseq_1_0_5" owner="stef"/>
     </package>
     -->
+
+    <action type="set_environment">
+        <environment_variable name="TOOL_DIR" action="prepend_to">$INSTALL_DIR</environment_variable>
+    </action>
     
 </tool_dependency>