Mercurial > repos > stef > qdnaseq
comparison tool_dependencies.xml @ 4:c2d97d59e527 draft
Uploaded
| author | stef |
|---|---|
| date | Fri, 13 Jun 2014 09:48:38 -0400 |
| parents | e81046cbc191 |
| children | d4747215fa6b |
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| 3:95d9c729b669 | 4:c2d97d59e527 |
|---|---|
| 4 <set_environment version="1.0"> | 4 <set_environment version="1.0"> |
| 5 <environment_variable name="QDNASEQ_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | 5 <environment_variable name="QDNASEQ_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 6 </set_environment> | 6 </set_environment> |
| 7 | 7 |
| 8 <package name="R" version="3.0.3"> | 8 <package name="R" version="3.0.3"> |
| 9 <repository changeset_revision="933ba62d2f11" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" /> | 9 <repository changeset_revision="933ba62d2f11" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/" /> |
| 10 </package> | 10 </package> |
| 11 | 11 |
| 12 <package name="bioc_qdnaseq" version="1.0.4"> | 12 <package name="bioc_qdnaseq" version="1.0.4"> |
| 13 <install version="1.0"> | 13 <install version="1.0"> |
| 14 <actions> | 14 <actions> |
| 15 <action type="download_by_url"> | 15 <action type="download_by_url"> |
| 16 http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.4.tar.gz | 16 http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.4.tar.gz |
| 17 </action> | 17 </action> |
| 18 <action type="set_environment_for_install"> | 18 <action type="set_environment_for_install"> |
| 19 <repository changeset_revision="933ba62d2f11" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/"> | 19 <repository changeset_revision="933ba62d2f11" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/"> |
| 20 <package name="R" version="3.0.3" /> | 20 <package name="R" version="3.0.3" /> |
| 21 </repository> | 21 </repository> |
| 22 </action> | 22 </action> |
| 23 <action type="shell_command">export R_LIBS=$INSTALL_DIR && R CMD INSTALL QDNAseq_1.0.4.tar.gz</action> | 23 <action type="shell_command">export R_LIBS=$INSTALL_DIR && R CMD INSTALL QDNAseq_1.0.4.tar.gz</action> |
| 24 | 24 |