Mercurial > repos > stef > qdnaseq

comparison tool_dependencies.xml @ 10:b408285701b1 draft

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Uploaded
author stef
date Mon, 16 Jun 2014 07:56:15 -0400
parents 437bd8b88be2
children 821fb6bdbbeb
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9:437bd8b88be2 10:b408285701b1
19 <action type="set_environment_for_install"> 19 <action type="set_environment_for_install">
20 <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/"> 20 <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/">
21 <package name="R" version="3.0.3" /> 21 <package name="R" version="3.0.3" />
22 </repository> 22 </repository>
23 </action> 23 </action>
24 <action type="shell_command">ls -l &amp;&amp; echo "print dir" &amp;&amp; pwd</action>
24 <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL QDNAseq_1.0.5.tar.gz</action> 25 <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>
25 <!--<action type="shell_command">R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>--> 26 <!--<action type="shell_command">R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>-->
26 27
27 <action type="set_environment"> 28 <action type="set_environment">
28 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable> 29 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>