comparison tool_dependencies.xml @ 50:5b5f7262f7ad draft

Uploaded

49:9debd89af654

<?xml version="1.0"?>
<tool_dependency>
    
    <package name="R" version="3.1.0">
        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <!-- There is no R 3.1.0 package yet which is required due to bioconductor 2.14 package -->
    <!-- As soon as it is available the dependencies will be set via "package_qdnaseq_1_0_5" -->
    <!--
    <package name="qdnaseq" version="1.0.5">
        <repository name="package_qdnaseq_1_0_5" owner="stef"/>
    </package>
    -->
    <package name="samtools" version="0.1.18">
        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    
</tool_dependency>

50:5b5f7262f7ad

<?xml version="1.0"?>
<tool_dependency>
    
    <package name="samtools" version="0.1.18">
        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
    </package>

    <package name="R" version="3.1.0">
        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
    </package>
    
    <!-- As soon as R 3_1_0 works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
    <!--
    <package name="qdnaseq" version="1.0.5">
        <repository name="package_qdnaseq_1_0_5" owner="stef"/>
    </package>
    -->
    
</tool_dependency>