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comparison QDNAseq.R @ 73:4db025c51b6e draft

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author stef
date Fri, 24 Oct 2014 07:06:55 -0400
parents fb2dfd8ba417
children 0feb7fa37245
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72:fb2dfd8ba417 73:4db025c51b6e
142 WEB_LINK <- 'http://www.bioconductor.org/packages/release/bioc/html/QDNAseq.html' 142 WEB_LINK <- 'http://www.bioconductor.org/packages/release/bioc/html/QDNAseq.html'
143 PURE_CSS <- 'http://yui.yahooapis.com/pure/0.5.0/pure-min.css' 143 PURE_CSS <- 'http://yui.yahooapis.com/pure/0.5.0/pure-min.css'
144 144
145 catMsg( "Starting QDNAseq wrapper" ) 145 catMsg( "Starting QDNAseq wrapper" )
146 catMsg( "Loading R libraries" ) 146 catMsg( "Loading R libraries" )
147 catMsg( R.version.string )
148
147 suppressWarnings( suppressMessages( library( QDNAseq, quietly = TRUE ) ) ) 149 suppressWarnings( suppressMessages( library( QDNAseq, quietly = TRUE ) ) )
148 suppressWarnings( suppressMessages( library( CGHcall, quietly = TRUE ) ) ) 150 suppressWarnings( suppressMessages( library( CGHcall, quietly = TRUE ) ) )
149 151
150 ## only one param: the tmp config file 152 ## only one param: the tmp config file
151 cmdLineArgs <- commandArgs(TRUE) 153 cmdLineArgs <- commandArgs(TRUE)