# HG changeset patch
# User stef
# Date 1412676388 14400
# Node ID e239f5546325d724685ea8133125c5f2b389bfc5
# Parent  d968a236421c0d3d1573c74c4de809f80304a253
Uploaded

diff -r d968a236421c -r e239f5546325 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 07 06:00:39 2014 -0400
+++ b/tool_dependencies.xml	Tue Oct 07 06:06:28 2014 -0400
@@ -25,7 +25,7 @@
 					<package>http://cran.fhcrc.org/src/contrib/R.utils_1.33.0.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/BiocGenerics_0.10.0.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/Biobase_2.24.0.tar.gz</package>
-					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/limma_3.20.5.tar.gz</package>
+					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/limma_3.20.9.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/marray_1.42.0.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/CGHbase_1.24.0.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/impute_1.38.1.tar.gz</package>
@@ -33,7 +33,7 @@
 					<package>http://cran.fhcrc.org/src/contrib/snow_0.3-13.tar.gz</package>
 					<package>http://cran.fhcrc.org/src/contrib/snowfall_1.84-6.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/CGHcall_2.26.0.tar.gz</package>
-					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/IRanges_1.22.9.tar.gz</package>
+					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/IRanges_1.22.10.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/GenomeInfoDb_1.0.2.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/XVector_0.4.0.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/GenomicRanges_1.16.4.tar.gz</package>
@@ -42,7 +42,7 @@
 					<package>http://cran.fhcrc.org/src/contrib/bitops_1.0-6.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/Rsamtools_1.16.1.tar.gz</package>
 					<package>http://bioconductor.org/packages/2.14/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</package>
-					
+
 					<!--
 					<package>http://path/to/R.methodsS3_1.6.1.tar.gz</package>
 					<package>http://path/to/matrixStats_0.10.0.tar.gz</package>