# HG changeset patch
# User stef
# Date 1403172161 14400
# Node ID 3fcdbbc43d6261febb3646d016006c5f64a0c782
# Parent  ce31fec9c3d5ea53a7bb27c4da32ba780a71924c
Uploaded

diff -r ce31fec9c3d5 -r 3fcdbbc43d62 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jun 19 06:00:14 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 19 06:02:41 2014 -0400
@@ -1,20 +1,20 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	<!--
-    <package name="R" version="3.1.0">
-        <repository name="package_r_3_1_0" owner="" prior_installation_required="True" />
-    </package>
-    <package name="qdnaseq" version="1.0.5">
-        <install version="1.0">
-            <actions>
+	<package name="R" version="3.1.0">
+		<repository name="package_r_3_1_0" owner="" prior_installation_required="True" />
+	</package>
+	<package name="qdnaseq" version="1.0.5">
+		<install version="1.0">
+			<actions>
 				<action type="shell_command">echo "[DEBUG] ..."</action>
-                <action type="setup_r_environment">
+				<action type="setup_r_environment">
 					
-                    <repository name="package_r_3_1_0" owner="">
-                        <package name="R" version="3.1.0" />
-                    </repository>
-                    
-                    <package>http://path/to/R.methodsS3_1.6.1.tar.gz</package>
+					<repository name="package_r_3_1_0" owner="">
+						<package name="R" version="3.1.0" />
+					</repository>
+					
+					<package>http://path/to/R.methodsS3_1.6.1.tar.gz</package>
 					<package>http://path/to/matrixStats_0.10.0.tar.gz</package>
 					<package>http://path/to/R.oo_1.18.0.tar.gz</package>
 					<package>http://path/to/R.utils_1.32.4.tar.gz</package>
@@ -38,12 +38,12 @@
 					<package>http://path/to/Rsamtools_1.16.1.tar.gz</package>
 					<package>http://path/to/QDNAseq_1.0.5.tar.gz</package>
 					
-                </action>
-            </actions>
-        </install>
-        <readme>
+				</action>
+			</actions>
+		</install>
+		<readme>
 			Prepares R Bioconductor package "QDNAseq" and all of its dependencies.
 		</readme>
-    </package>
+	</package>
 	-->
 </tool_dependency>