Mercurial > repos > stef > package_bioc_qdnaseq_1_0_4
changeset 2:888f5f92d8c6 draft default tip
Deleted selected files
| author | stef |
|---|---|
| date | Thu, 19 Jun 2014 06:05:00 -0400 |
| parents | 64423b52e8e5 |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 0 insertions(+), 36 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Mon Jun 16 04:35:01 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,36 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - - <set_environment version="1.0"> - <environment_variable name="QDNASEQ_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> - </set_environment> - - <package name="R" version="3.0.3"> - <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/" /> - </package> - - <package name="bioc_qdnaseq" version="1.0.5"> - <install version="1.0"> - <actions> - <action type="download_by_url"> - http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz - </action> - <action type="set_environment_for_install"> - <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/"> - <package name="R" version="3.0.3" /> - </repository> - </action> - <action type="shell_command">export R_LIBS=$INSTALL_DIR && R CMD INSTALL QDNAseq_1.0.5.tar.gz</action> - - <action type="set_environment"> - <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - - <readme> - Should install QDNAseq package from bioconductor. - </readme> - </package> - -</tool_dependency>