# HG changeset patch
# User stef
# Date 1425042672 18000
# Node ID 9f95eee386815b1dd6aaa54325eac704077cf4d2
# Parent  f2dc1009d668da3c7b2e31655a91cebe243493a5
Uploaded

diff -r f2dc1009d668 -r 9f95eee38681 falco-filter-report.sh
--- a/falco-filter-report.sh	Fri Feb 27 07:00:33 2015 -0500
+++ b/falco-filter-report.sh	Fri Feb 27 08:11:12 2015 -0500
@@ -102,15 +102,15 @@
 ## ----------
 ## creating galaxy history outputs
 ## ----------
-cp 'index.html' $html_out # this is the overview of samples html
-#cp $bam_base'.html' $out_path/'out.html' # this is the sample html
+#cp 'index.html' $html_out # this is the overview of samples html
+cp $bam_base'.html' $out_path/'out.html' # this is the sample html
 
 ## ----------
 ## copy files to keep to output path
 ## ----------
 #cp -r ./$bam_base/*png $out_path/$bam_base/
-#cp -r ./* $out_path
-cp *.vcf $out_path; cp *.txt $out_path; cp *_std* $out_path
+cp -r ./* $out_path
+#cp *.vcf $out_path; cp *.txt $out_path; cp *_std* $out_path
 
 ## ----------
 echo "END falco sh"