# HG changeset patch
# User stef
# Date 1427111144 14400
# Node ID 9995d7db92ff203d56144c1d14ffa05715b399bc
# Parent  b17c87f564225e6e699bcc8817fad90778911e65
fixed the second vcf input

diff -r b17c87f56422 -r 9995d7db92ff falco-filter-report.xml
--- a/falco-filter-report.xml	Mon Mar 23 07:31:08 2015 -0400
+++ b/falco-filter-report.xml	Mon Mar 23 07:45:44 2015 -0400
@@ -7,7 +7,7 @@
     
   </requirements>
 
-  <description>FALCO Report: Amplicon Analysis Pipeline</description>
+  <description>FALCO Amplicon Analysis Pipeline Reporting</description>
 
   <command interpreter="bash">
     falco-filter-report.sh $falco_cfg;
diff -r b17c87f56422 -r 9995d7db92ff falco/bin/falco-filter-report
--- a/falco/bin/falco-filter-report	Mon Mar 23 07:31:08 2015 -0400
+++ b/falco/bin/falco-filter-report	Mon Mar 23 07:45:44 2015 -0400
@@ -76,7 +76,7 @@
 
 if ( defined($vcfOther) ){
 	print STDOUT localtime() . " [$$] converting vcf to tsv\n";
-	system( "$vcf2tsv $vcf > $base\.Other\.tsv" );
+	system( "$vcf2tsv $vcfOther > $base\.Other\.tsv" );
 	print STDOUT localtime() . " [$$] splitting vcf columns\n";
 	system( "$spliteff $base\.Other\.tsv Other >> $base\.res\.tsv" );
 }