# HG changeset patch # User stef # Date 1420028299 18000 # Node ID 55a9c30fc11cfc84d2339b567691f4e672fa85e2 # Parent 036033e7475783adb8ea1a2e38b1b5a2ed255491 Uploaded diff -r 036033e74757 -r 55a9c30fc11c tool-data/all_fasta.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/all_fasta.loc.sample Wed Dec 31 07:18:19 2014 -0500 @@ -0,0 +1,26 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory with indexed fasta files. The all_fasta.loc file has +#this format (longer white space characters are TAB characters): +# +# +# +#So, for example, if you had phiX indexed stored in +#/example/path/ +#then the all_fasta.loc entry would look like this: +# +#phiX174 phiX phiX Pretty /example/path/phiX.fa +# +#and your /example/path/ directory +#would contain phiX.fa.* files: +# +# phiX.fa.fai +# phiX.fa.dict +# +#Your all_fasta.loc file should include an entry per line for each +#index set you have stored. For example: +# +#phiX174 phiX phiX174 /path/to/phiX.fa +#hg18 hg18 hg18 Full /path/to/hg18full.fa +#hg19 hg19 hg19 /path/to/hg19.fa +#...etc... +# diff -r 036033e74757 -r 55a9c30fc11c tool-data/fasta_index.loc.sample --- a/tool-data/fasta_index.loc.sample Wed Dec 31 07:16:40 2014 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory with indexed fasta files. The all_fasta.loc file has -#this format (longer white space characters are TAB characters): -# -# -# -#So, for example, if you had phiX indexed stored in -#/example/path/ -#then the all_fasta.loc entry would look like this: -# -#phiX174 phiX phiX Pretty /example/path/phiX.fa -# -#and your /example/path/ directory -#would contain phiX.fa.* files: -# -# phiX.fa.fai -# phiX.fa.dict -# -#Your all_fasta.loc file should include an entry per line for each -#index set you have stored. For example: -# -#phiX174 phiX phiX174 /path/to/phiX.fa -#hg18 hg18 hg18 Full /path/to/hg18full.fa -#hg19 hg19 hg19 /path/to/hg19.fa -#...etc... -#