Mercurial > repos > stef > falco

diff falco.sh @ 5:90badfe82b95 draft

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Uploaded
author stef
date Thu, 11 Sep 2014 06:56:58 -0400
parents 4d3009640314
children c84ed1b12d67
line wrap: on
line diff
--- a/falco.sh	Thu Sep 11 06:40:27 2014 -0400
+++ b/falco.sh	Thu Sep 11 06:56:58 2014 -0400
@@ -64,6 +64,12 @@
 echo "HTMLOUT: "$html_out
 echo "VCFOUT : "$vcf_out
 echo "INIT   : "$init_file
+source $init_file
+echo "--- sam ---"
+samtools
+echo "--- bcf ---"
+bcftools
+exit 0
 
 ## ----------
 ## create output files dir