Mercurial > repos > stef > falco

diff falco-call.sh @ 29:02e5aee670de draft

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Uploaded
author stef
date Fri, 10 Oct 2014 06:28:46 -0400
parents bff3cf6954f7
children c7203abb7040
line wrap: on
line diff
--- a/falco-call.sh	Fri Oct 10 06:26:38 2014 -0400
+++ b/falco-call.sh	Fri Oct 10 06:28:46 2014 -0400
@@ -77,8 +77,8 @@
 #echo "--- varscan ---"
 #java -jar $varScan
 
-## DEBUG
-#exit 0
+
+
 
 ## ----------
 ## create output files dir
@@ -90,6 +90,10 @@
 ## running analysis
 ## ----------
 echo "Starting VcAn"
+
+## DEBUG
+exit 0
+
 $TOOLDIR/falco/amplicon-VcAn-TSACP.sh $bam_file $bam_base
 #$TOOLDIR/falco/amplicon-AlVcAn-TSACP.sh ## this contains more