Mercurial > repos > stef > falco
comparison falco-filter-report.sh @ 63:9f95eee38681 draft
Uploaded
| author | stef |
|---|---|
| date | Fri, 27 Feb 2015 08:11:12 -0500 |
| parents | 77979fe362c0 |
| children | de843dbd0f62 |
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| 62:f2dc1009d668 | 63:9f95eee38681 |
|---|---|
| 100 echo "</html>" >> $html_out | 100 echo "</html>" >> $html_out |
| 101 | 101 |
| 102 ## ---------- | 102 ## ---------- |
| 103 ## creating galaxy history outputs | 103 ## creating galaxy history outputs |
| 104 ## ---------- | 104 ## ---------- |
| 105 cp 'index.html' $html_out # this is the overview of samples html | 105 #cp 'index.html' $html_out # this is the overview of samples html |
| 106 #cp $bam_base'.html' $out_path/'out.html' # this is the sample html | 106 cp $bam_base'.html' $out_path/'out.html' # this is the sample html |
| 107 | 107 |
| 108 ## ---------- | 108 ## ---------- |
| 109 ## copy files to keep to output path | 109 ## copy files to keep to output path |
| 110 ## ---------- | 110 ## ---------- |
| 111 #cp -r ./$bam_base/*png $out_path/$bam_base/ | 111 #cp -r ./$bam_base/*png $out_path/$bam_base/ |
| 112 #cp -r ./* $out_path | 112 cp -r ./* $out_path |
| 113 cp *.vcf $out_path; cp *.txt $out_path; cp *_std* $out_path | 113 #cp *.vcf $out_path; cp *.txt $out_path; cp *_std* $out_path |
| 114 | 114 |
| 115 ## ---------- | 115 ## ---------- |
| 116 echo "END falco sh" | 116 echo "END falco sh" |
| 117 exit 0 | 117 exit 0 |