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0
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1 SEQuel wrapper
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2 ==============
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3
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4 Configuration
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5 -------------
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6
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7 sequel_wrapper tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see https://wiki.galaxyproject.org/Admin/Config/Jobs and https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ).
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8
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9 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool.
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10
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11 If instead you are using an older Galaxy release, you should also add a line
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12
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13 GALAXY_SLOTS=N; export GALAXY_SLOTS
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14
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15 (where N is the number of CPU cores allocated by the job runner for this tool) to the file
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16
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17 <tool_dependencies_dir>/sequel/1.0.2/crs4/sequel/<hash_string>/env.sh
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18
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19 Version history
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20 ---------------
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21
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1
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22 - Release 2: Fix version for blat requirement (reported by Björn Grüning). Upgrade BWA dependency to v. 0.7.7 . Update Orione citation.
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0
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23 - Release 1: Use $GALAXY_SLOTS instead of $SEQUEL_SITE_OPTIONS. Depend on package_blat_35x1 . Add readme.rst . Update Orione citation.
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24 - Release 0: Initial release in the Tool Shed.
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25
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26 Development
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27 -----------
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28
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29 Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!
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