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<tool id="vennt" name="Vennt" version="1.0.0">
    <description>RNA Seq analysis and visualisation.</description>
    <command interpreter="python">
        vennt.py
        --tab
        $cuffdiff
        $dataset
        > 
        $output
    </command>
    <inputs>
        <param name="dataset" type="data" format="tabular" label="Cuffdiff gene/transcript expression testing output" help="Cuffdiff output to visualise."/>
        <param name="cuffdiff" type="boolean" truevalue="--cuffdiff" falsevalue="" checked="false" label="Cuffdiff data" help="Is this cuffdiff output data?"/>
        <param name="tab" type="boolean" truevalue="--tab" falsevalue="" checked="false" label="Tab delimited data?" help="Is this tab delimited data? (Instead of csv)"/>
    </inputs>
    <outputs>
        <data name="output" format="html" label="${tool.name} on ${on_string}: html"/>
    </outputs>
    
    <help>
**Vennt**

Dynamic Venn diagrams for exploring lists of differential expressed genes.

Written by David Powell - Victorian Bioinformatics Consortium 2012 - 2014

Wrapped by Simon Gladman - Victorian Bioinformatics Consortium 2014

0.8.1
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Outputs in html format.
    
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Inputs:

Gene differential expression dataset

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    </help>
</tool>