# HG changeset patch
# User simon-gladman
# Date 1374567480 14400
# Node ID b1043aaf771ddfd47592193698593a5c3a2cc03c
# Parent  26b1bd2d7175dc0a749c42426d1195c02ef18ec0
Uploaded

diff -r 26b1bd2d7175 -r b1043aaf771d velvet_optimiser_wrapper_vlsci.pl
--- a/velvet_optimiser_wrapper_vlsci.pl	Tue Jul 23 03:56:00 2013 -0400
+++ b/velvet_optimiser_wrapper_vlsci.pl	Tue Jul 23 04:18:00 2013 -0400
@@ -24,6 +24,7 @@
 use strict;
 use warnings;
 use File::Copy;
+use Env qw (PATH);
 
 my @stuff = @ARGV;
 my %counts;
@@ -135,7 +136,7 @@
 $cmd .= " 2> $stderr";
 
 print "\n$cmd\n";
-print "PATH=" . system('echo $PATH') . "\n";
+print "PATH= $PATH\n";
 
 print "about to run the command!\n";