# HG changeset patch
# User simon-gladman
# Date 1404943532 14400
# Node ID afc124ad65f071a16982c2dcbac142ac92cae4d8
# Parent  e131e21fce1f3f922d7eebe025d5a46546fdb388
Uploaded

diff -r e131e21fce1f -r afc124ad65f0 trimmomatic.xml
--- a/trimmomatic.xml	Wed Jul 09 17:39:07 2014 -0400
+++ b/trimmomatic.xml	Wed Jul 09 18:05:32 2014 -0400
@@ -148,6 +148,10 @@
         <data name="singles" format="fastq" label="${tool.name} on ${on_string}: trimmed reads"/>
         <data name="dummy_out" format="tabular" label="${tool.name} on ${on_string}: DEBUG OUTPUT" hidden="True"/>
     </outputs>
+    
+    <stdio>
+         <exit_code range="1:"   level="fatal"   description="Trimmomatic error" />
+    </stdio>
     <help>
 ***Trimmomatic***