Mercurial > repos > simon-gladman > snippy
changeset 22:577b1b17a0ff draft default tip
Added snippy-core tool
| author | simon-gladman |
|---|---|
| date | Thu, 09 Jun 2016 09:44:50 -0400 |
| parents | ebd7a957ff4b |
| children | |
| files | snippy-core.xml snippy_core_wrapper.pl |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/snippy-core.xml Thu Jun 09 09:38:24 2016 -0400 +++ b/snippy-core.xml Thu Jun 09 09:44:50 2016 -0400 @@ -20,7 +20,7 @@ <inputs> <param name="indirs" type="data" multiple="true" format="zip" label="Snippy input zipped dirs" help="Select all the snippy inputs for alignment" /> <param name="is_reference" type="boolean" checked="true" truevalue="--noref" falsevalue="" label="Exclude reference" help="Don't include the reference file in the alignment." /> - <param name="mincov" type="float" value="10.0" min="1" label="Minimum coverage" help="Minimum depth of coverage to consider core (default '10')" /> + <param name="mincov" type="integer" value="10" min="1" label="Minimum coverage" help="Minimum depth of coverage to consider core (default '10')" /> </inputs> <outputs>
--- a/snippy_core_wrapper.pl Thu Jun 09 09:38:24 2016 -0400 +++ b/snippy_core_wrapper.pl Thu Jun 09 09:44:50 2016 -0400 @@ -55,7 +55,7 @@ @Options = ( {OPT=>"help", VAR=>\&usage, DESC=>"This help"}, - {OPT=>"mincov=f", VAR=>\$mincov, DEFAULT=>'10.0', DESC=>"The minimum coverage to consider."}, + {OPT=>"mincov=i", VAR=>\$mincov, DEFAULT=>'10.0', DESC=>"The minimum coverage to consider."}, {OPT=>"noref!", VAR=>\$noref, DEFAULT=>0, DESC=>"Don't include the reference in the alignment."}, {OPT=>"indirs=s", VAR=>\$indirs, DEFAULT=>"", DESC=>"A whitespace delimited list of the snippy output zipped dirs."}, );