comparison snippy-core.xml @ 21:ebd7a957ff4b draft

Added snippy-core tool

20:d1a4cfe44743

        --indirs '${" ".join(map(str, $indirs))}'

    ]]></command>

    <inputs>
      <param name="indirs" type="data" multiple="true" format="bgzip" label="Snippy input zipped dirs" help="Select all the snippy inputs for alignment" />
      <param name="is_reference" type="boolean" checked="true" truevalue="--noref" falsevalue="" label="Exclude reference" help="Don't include the reference file in the alignment." />
      <param name="mincov" type="float" value="10.0" min="1" label="Minimum coverage" help="Minimum depth of coverage to consider core (default '10')" />
    </inputs>

    <outputs>

21:ebd7a957ff4b

        --indirs '${" ".join(map(str, $indirs))}'

    ]]></command>

    <inputs>
      <param name="indirs" type="data" multiple="true" format="zip" label="Snippy input zipped dirs" help="Select all the snippy inputs for alignment" />
      <param name="is_reference" type="boolean" checked="true" truevalue="--noref" falsevalue="" label="Exclude reference" help="Don't include the reference file in the alignment." />
      <param name="mincov" type="float" value="10.0" min="1" label="Minimum coverage" help="Minimum depth of coverage to consider core (default '10')" />
    </inputs>

    <outputs>