Mercurial > repos > simon-gladman > snippy

comparison snippy.xml @ 12:970c6b527062 draft

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Updated to new version of snippy with static binaries
author simon-gladman
date Wed, 08 Jun 2016 21:55:50 -0400
parents 68a43b0593a3
children 259aa64b2c99
comparison
equal deleted inserted replaced
11:68a43b0593a3 12:970c6b527062
120 <data format="fasta" name="snpconsensus" label="${tool.name} on ${on_string} consensus fasta" from_work_dir="out/snps.consensus.fa"/> 120 <data format="fasta" name="snpconsensus" label="${tool.name} on ${on_string} consensus fasta" from_work_dir="out/snps.consensus.fa"/>
121 <data format="tabular" name="snpsdepth" label="${tool.name} on ${on_string} mapping depth" from_work_dir="out/snps.depth"/> 121 <data format="tabular" name="snpsdepth" label="${tool.name} on ${on_string} mapping depth" from_work_dir="out/snps.depth"/>
122 <data format="bam" name="snpsbam" label="${tool.name} on ${on_string} mapped reads (bam)" from_work_dir="out/snps.bam"> 122 <data format="bam" name="snpsbam" label="${tool.name} on ${on_string} mapped reads (bam)" from_work_dir="out/snps.bam">
123 <filter>cleanup is False</filter> 123 <filter>cleanup is False</filter>
124 </data> 124 </data>
125 <data format="bgzip" name="outdir" label="${tool.name} on ${on_string} out dir" from_work_dir="out.bgz" /> 125 <data format="bgzip" name="outdir" label="${tool.name} on ${on_string} out dir" from_work_dir="out.gz" />
126 </outputs> 126 </outputs>
127 127
128 <tests> 128 <tests>
129 <test> 129 <test>
130 <param name="ref_type_selector" value="fasta" /> 130 <param name="ref_type_selector" value="fasta" />