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comparison snippy.xml @ 17:2fbf00cd46ca draft

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Updated to new version of snippy with static binaries
author simon-gladman
date Wed, 08 Jun 2016 23:46:47 -0400
parents 29ad0319f14b
children
comparison
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16:29ad0319f14b 17:2fbf00cd46ca
121 <data format="fasta" name="snpconsensus" label="${tool.name} on ${on_string} consensus fasta" from_work_dir="out/snps.consensus.fa"/> 121 <data format="fasta" name="snpconsensus" label="${tool.name} on ${on_string} consensus fasta" from_work_dir="out/snps.consensus.fa"/>
122 <data format="tabular" name="snpsdepth" label="${tool.name} on ${on_string} mapping depth" from_work_dir="out/snps.depth"/> 122 <data format="tabular" name="snpsdepth" label="${tool.name} on ${on_string} mapping depth" from_work_dir="out/snps.depth"/>
123 <data format="bam" name="snpsbam" label="${tool.name} on ${on_string} mapped reads (bam)" from_work_dir="out/snps.bam"> 123 <data format="bam" name="snpsbam" label="${tool.name} on ${on_string} mapped reads (bam)" from_work_dir="out/snps.bam">
124 <filter>cleanup is False</filter> 124 <filter>cleanup is False</filter>
125 </data> 125 </data>
126 <data format="bgzip" name="outdir" label="${tool.name} on ${on_string} out dir" from_work_dir="out.gz" /> 126 <data format="zip" name="outdir" label="${tool.name} on ${on_string} out dir" from_work_dir="out.tgz" />
127 </outputs> 127 </outputs>
128 128
129 <tests> 129 <tests>
130 <test> 130 <test>
131 <param name="ref_type_selector" value="fasta" /> 131 <param name="ref_type_selector" value="fasta" />