Mercurial > repos > simon-gladman > snippy

comparison snippy.xml @ 7:1034b854d0ba draft

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Update to package_snippy_3_0
author simon-gladman
date Sat, 04 Jun 2016 03:11:24 -0400
parents 6ae77254acf4
children 3b23249fe471
comparison
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6:6ae77254acf4 7:1034b854d0ba
1 <tool id="snippy" name="snippy" version="0.2.0"> 1 <tool id="snippy" name="snippy" version="0.2.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="3.0">snippy</requirement> 3 <requirement type="package" version="3.0">snippy</requirement>
4 <requirement type="package" version="1.2">samtools</requirement>
4 </requirements> 5 </requirements>
5 <stdio> 6 <stdio>
6 <exit_code range="1:" /> 7 <exit_code range="1:" />
7 </stdio> 8 </stdio>
8 9
112 113
113 114
114 <help><![CDATA[ 115 <help><![CDATA[
115 This is a change to force a reinstall 116 This is a change to force a reinstall
116 Synopsis: 117 Synopsis:
117 snippy 2.6 - fast bacterial variant calling from NGS reads 118 snippy 3.0 - fast bacterial variant calling from NGS reads
118 Author: 119 Author:
119 Torsten Seemann <torsten.seemann@gmail.com> 120 Torsten Seemann <torsten.seemann@gmail.com>
120 Usage: 121 Usage:
121 snippy [options] --outdir <dir> --ref <ref> --pe1 <R1.fq.gz> --pe2 <R2.fq.gz> 122 snippy [options] --outdir <dir> --ref <ref> --pe1 <R1.fq.gz> --pe2 <R2.fq.gz>
122 snippy [options] --outdir <dir> --ref <ref> --se <454.fastq> 123 snippy [options] --outdir <dir> --ref <ref> --se <454.fastq>