Mercurial > repos > simon-gladman > phyloseq_nmds

diff test-data/GP_SAMPLE_TABLE.txt @ 0:b4606394e7ec draft

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planemo upload
author simon-gladman
date Thu, 14 Jun 2018 09:08:23 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GP_SAMPLE_TABLE.txt	Thu Jun 14 09:08:23 2018 -0400
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+X.SampleID	Primer	Final_Barcode	Barcode_truncated_plus_T	Barcode_full_length	SampleType	Description
+CL3	CL3	ILBC_01	AACGCA	TGCGTT	CTAGCGTGCGT	Soil	Calhoun South Carolina Pine soil, pH 4.9
+CC1	CC1	ILBC_02	AACTCG	CGAGTT	CATCGACGAGT	Soil	Cedar Creek Minnesota, grassland, pH 6.1
+SV1	SV1	ILBC_03	AACTGT	ACAGTT	GTACGCACAGT	Soil	Sevilleta new Mexico, desert scrub, pH 8.3
+M31Fcsw	M31Fcsw	ILBC_04	AAGAGA	TCTCTT	TCGACATCTCT	Feces	M3, Day 1, fecal swab, whole body study
+M11Fcsw	M11Fcsw	ILBC_05	AAGCTG	CAGCTT	CGACTGCAGCT	Feces	M1, Day 1, fecal swab, whole body study 
+M31Plmr	M31Plmr	ILBC_07	AATCGT	ACGATT	CGAGTCACGAT	Skin	M3, Day 1, right palm, whole body study
+M11Plmr	M11Plmr	ILBC_08	ACACAC	GTGTGT	GCCATAGTGTG	Skin	M1, Day 1, right palm, whole body study 
+F21Plmr	F21Plmr	ILBC_09	ACACAT	ATGTGT	GTAGACATGTG	Skin	F1, Day 1,  right palm, whole body study 
+M31Tong	M31Tong	ILBC_10	ACACGA	TCGTGT	TGTGGCTCGTG	Tongue	M3, Day 1, tongue, whole body study 
+M11Tong	M11Tong	ILBC_11	ACACGG	CCGTGT	TAGACACCGTG	Tongue	M1, Day 1, tongue, whole body study 
+LMEpi24M	LMEpi24M	ILBC_13	ACACTG	CAGTGT	CATGAACAGTG	Freshwater	Lake Mendota Minnesota, 24 meter epilimnion 
+SLEpi20M	SLEpi20M	ILBC_15	ACAGAG	CTCTGT	AGCCGACTCTG	Freshwater	Sparkling Lake Wisconsin, 20 meter eplimnion
+AQC1cm	AQC1cm	ILBC_16	ACAGCA	TGCTGT	GACCACTGCTG	Freshwater (creek)	Allequash Creek, 0-1cm depth
+AQC4cm	AQC4cm	ILBC_17	ACAGCT	AGCTGT	CAAGCTAGCTG	Freshwater (creek)	Allequash Creek, 3-4 cm depth
+AQC7cm	AQC7cm	ILBC_18	ACAGTG	CACTGT	ATGAAGCACTG	Freshwater (creek)	Allequash Creek, 6-7 cm depth
+NP2	NP2	ILBC_19	ACAGTT	AACTGT	TCGCGCAACTG	Ocean	Newport Pier, CA surface water, Time 1
+NP3	NP3	ILBC_20	ACATCA	TGATGT	GCTAAGTGATG	Ocean	Newport Pier, CA surface water, Time 2
+NP5	NP5	ILBC_21	ACATGA	TCATGT	GAACGATCATG	Ocean	Newport Pier, CA surface water, Time 3
+TRRsed1	TRRsed1	ILBC_22	ACATGT	ACATGT	CACGTGACATG	Sediment (estuary)	Tijuana River Reserve, depth 1
+TRRsed2	TRRsed2	ILBC_23	ACATTC	GAATGT	TGCGCTGAATG	Sediment (estuary)	Tijuana River Reserve, depth 2
+TRRsed3	TRRsed3	ILBC_24	ACCACA	TGTGGT	GATGTATGTGG	Sediment (estuary)	Tijuana River Reserve, depth 2
+TS28	TS28	ILBC_25	ACCAGA	TCTGGT	GCATCGTCTGG	Feces	Twin #1
+TS29	TS29	ILBC_26	ACCAGC	GCTGGT	CTAGTCGCTGG	Feces	Twin #2
+Even1	Even1	ILBC_27	ACCGCA	TGCGGT	TGACTCTGCGG	Mock	Even1
+Even2	Even2	ILBC_28	ACCTCG	CGAGGT	TCTGATCGAGG	Mock	Even2
+Even3	Even3	ILBC_29	ACCTGT	ACAGGT	AGAGAGACAGG	Mock	Even3