Mercurial > repos > simon-gladman > phyloseq_nmds
comparison phyloseq_nmds.xml @ 4:d06ddf67468f draft default tip
planemo upload commit 5ca7dbbc2e9d6107b706376cd36742cf0c816534-dirty
| author | simon-gladman |
|---|---|
| date | Tue, 04 Sep 2018 21:41:23 -0400 |
| parents | 5a2bda9b28c5 |
| children |
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| 3:5a2bda9b28c5 | 4:d06ddf67468f |
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| 94 <test> <!-- Test #1: Test BIOM format input --> | 94 <test> <!-- Test #1: Test BIOM format input --> |
| 95 <!-- Equivalent command (replace + with double dash): Rscript phyloseq_nmds.R +biom=test-data/GP.biom +subset=6 +method=NMDS | 95 <!-- Equivalent command (replace + with double dash): Rscript phyloseq_nmds.R +biom=test-data/GP.biom +subset=6 +method=NMDS |
| 96 +distance=bray +kingdom=Phylum +cutoff=5 +keep=5 +outdir=outputdir +htmlfile=biom_out.html --> | 96 +distance=bray +kingdom=Phylum +cutoff=5 +keep=5 +outdir=outputdir +htmlfile=biom_out.html --> |
| 97 <conditional name="file_source"> | 97 <conditional name="file_source"> |
| 98 <param name="file_source_selector" value="set_biom"/> | 98 <param name="file_source_selector" value="set_biom"/> |
| 99 <param name="input" value="GP.biom" /> | 99 <param name="input" value="GP.biom" ftype="biom1" /> |
| 100 <param name="subsetColumn" value="Primer" /> | 100 <param name="subsetColumn" value="Primer" /> |
| 101 </conditional> | 101 </conditional> |
| 102 <output name="htmlfile" ftype="html" file="biom_out.html" /> | 102 <output name="htmlfile" ftype="html" file="biom_out.html" /> |
| 103 </test> | 103 </test> |
| 104 <test> <!-- Test #2: Test TABULAR format inputs --> | 104 <test> <!-- Test #2: Test TABULAR format inputs --> |