# HG changeset patch
# User simon-gladman
# Date 1370928463 14400
# Node ID 3eca3cb79e74dace6af5ea29e3c3e3a29e8dbca8
# Parent  cd282d58f35061a9dc1f4f26c7f79786b8260d74
Uploaded

diff -r cd282d58f350 -r 3eca3cb79e74 fasta-stats.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fasta-stats.xml	Tue Jun 11 01:27:43 2013 -0400
@@ -0,0 +1,38 @@
+<tool id="fasta-stats" name="Fasta Statistics" version="1.0.0">
+    <description>Display summary statistics for a fasta file.</description>
+    <command interpreter="perl">
+        fasta-stats.pl $dataset > $stats
+    </command>
+    <inputs>
+        <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/>
+    </inputs>
+    <outputs>
+        <data name="stats" format="tabular" label="${tool.name} on ${on_string}: Fasta summary stats"/>
+    </outputs>
+    
+    <help>
+**Fasta Stats**
+Displays the summary statistics for a fasta file.
+
+Written by Torsten Seemann - Victorian Bioinformatics Consortium
+
+Wrapped by Simon Gladman - Victorian Bioinformatics Consortium
+
+------
+
+Outputs in tabular form:
+    Lengths: n50, min, max, median and average
+    
+    Number of base pairs: A, C, G, T, N, Total and Total_not_N
+    
+    Number of sequences
+    
+    GC content in %
+
+------
+
+Inputs:
+
+Fasta dataset    
+    </help>
+</tool>