|
0
|
1 <tool id="fa-extract-sequence" name="Fasta Extract Sequence" version="1.0.0">
|
|
|
2 <description>Extract a single sequence from a fasta file.</description>
|
|
|
3 <command interpreter="perl">
|
|
|
4 fa-extract-few.pl
|
|
|
5 -f $dataset
|
|
|
6 $id
|
|
|
7 >
|
|
|
8 $output
|
|
|
9 </command>
|
|
|
10 <inputs>
|
|
|
11 <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/>
|
|
|
12 <param name="id" type="text" label="Sequence ID (or partial)" help="Name of the sequence to extract. Will also match partial names and return all matches." />
|
|
|
13 </inputs>
|
|
|
14 <outputs>
|
|
|
15 <data name="output" format="fasta" label="${tool.name} on ${on_string}: Fasta"/>
|
|
|
16 </outputs>
|
|
|
17
|
|
|
18 <help>
|
|
|
19 **Fasta Extract Sequence**
|
|
|
20 Extracts a fasta sequence from a multfasta by id (exact or partial)
|
|
|
21
|
|
|
22 Written by Torsten Seemann - Victorian Bioinformatics Consortium
|
|
|
23
|
|
|
24 Wrapped by Simon Gladman - Victorian Bioinformatics Consortium
|
|
|
25
|
|
|
26 ------
|
|
|
27
|
|
|
28 Outputs in fasta format.
|
|
|
29
|
|
|
30 ------
|
|
|
31
|
|
|
32 Inputs:
|
|
|
33
|
|
|
34 Fasta dataset
|
|
|
35
|
|
|
36 Sequence id
|
|
|
37 </help>
|
|
|
38 </tool>
|
