# HG changeset patch
# User shirish
# Date 1401799905 14400
# Node ID 301e116496ee156017e8e1ee5280df2edcd1d93d
# Parent aeea494b66b95bc43a75c80a7d89bb6d84501edb
Deleted selected files
diff -r aeea494b66b9 -r 301e116496ee softsearch.xml
--- a/softsearch.xml Tue Jun 03 08:29:01 2014 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,57 +0,0 @@
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- ss_tool
- samtools
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- for structure variation
- #if $source.index_source=="history"
- samtools index $bam_file ; samtools faidx $source.history_fasta_file ; $inc | SoftSearch.pl -l $min_length_soft_clip -q $min_map_quality -r $min_depth_soft_clip_loc -m $min_no_discordant_read -s $no_sd_consider_discordant -b $bam_file -f $source.history_fasta_file -o $out_file1
- #else
- samtools index $bam_file ; samtools faidx $source.ref_fasta.fields.path ; $inc | SoftSearch.pl -l $min_length_soft_clip -q $min_map_quality -r $min_depth_soft_clip_loc -m $min_no_discordant_read -s $no_sd_consider_discordant -b $bam_file -f $source.ref_fasta.fields.path -o $out_file1
- #end if
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diff -r aeea494b66b9 -r 301e116496ee tool_dependencies.xml
--- a/tool_dependencies.xml Tue Jun 03 08:29:01 2014 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
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