Mercurial > repos > shians > shrnaseq

changeset 52:466bf577661f default tip

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Uploaded
author shian_su <registertonysu@gmail.com>
date Thu, 20 Nov 2014 16:37:54 +1100
parents 667e683c143b
children
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 20 16:17:07 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 16:37:54 2014 +1100
@@ -1,26 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R_3_1_1" version="3.1.1">
-        <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
-    </package>
     <package name="shrnaseq" version="1.2.1">
-        <install version="1.0">
-            <actions>
-                <action type="setup_r_environment">
-                    
-                    <repository name="package_r_3_1_1" owner="fubar">
-                        <package name="R_3_1_1" version="3.1.1" />
-                    </repository>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            shrnaseq analysis using edgeR bioConductor package.
-            http://bioconductor.org/packages/release/bioc/html/edgeR.html
-        </readme>
+        <repository name="package_shrnaseq_1_2_1" owner="shians" />
     </package>
 </tool_dependency>