# HG changeset patch
# User shian_su <registertonysu@gmail.com>
# Date 1416441739 -39600
# Node ID 2914798edd59bc4d9c7e84d5158ec630c9e6de97
# Parent  9cbb07225ffbf473ab84228bab22fa3beaa9e93d
- Full script replacement

diff -r 9cbb07225ffb -r 2914798edd59 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 20 11:00:58 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 11:02:19 2014 +1100
@@ -5,14 +5,24 @@
         <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
     </package>
 
-    <package name="R" version="3.0.1" />
-        <actions>
-            <action type="setup_r_environment">
-                <repository name="package_r_3_0_1" owner="iuc">
-                    <package name="R" version="3.0.1" />
-                </repository>
-                <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_0_18BiocGenerics_0.6.0.tar.gz6</package>
-            </action>
-        </actions>
+    <package name="shrnaseq" version="1.0.10">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    
+                    <repository name="package_r_3_1_1" owner="fubar">
+                        <package name="R_3_1_1" version="3.1.1" />
+                    </repository>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            shrnaseq analysis using edgeR bioConductor package.
+            http://bioconductor.org/packages/release/bioc/html/edgeR.html
+        </readme>
     </package>
 </tool_dependency>