Mercurial > repos > shians > package_shrnaseq_1_2_1

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author shian_su <registertonysu@gmail.com>
date Thu, 20 Nov 2014 16:38:02 +1100
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.0">
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4 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6
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7 <package name="shrnaseq" version="1.2.1">
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8 <install version="1.0">
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9 <actions>
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10 <action type="setup_r_environment">
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11 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="R" version="3.1.0" />
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13 </repository>
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14 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_2_10/getopt_1.20.0.tar.gz</package>
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15 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/BiocGenerics_0.12.1.tar.gz</package>
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16 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Rcpp_0.11.3.tar.gz</package>
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17 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RcppArmadillo_0.4.500.0.tar.gz</package>
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18 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/S4Vectors_0.4.0.tar.gz</package>
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19 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/IRanges_2.0.0.tar.gz</package>
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20 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/XVector_0.6.0.tar.gz</package>
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21 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/GenomeInfoDb_1.2.2.tar.gz</package>
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22 <!-- wrapper dependency -->
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23 <package>http://cran.r-project.org/src/contrib/Archive/rjson/rjson_0.2.14.tar.gz</package>
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24 </action>
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25 </actions>
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26 </install>
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27 <readme>
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28 Differential gene expression analysis based on the negative binomial distribution.
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29 http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
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30 </readme>
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31 </package>
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32 </tool_dependency>