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annotate test-data/test.fa @ 0:c7dcf2635d04 draft

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author sh477
date Wed, 06 Apr 2022 15:34:15 +0000
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0
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1 >21 dna:chromosome chromosome:GRCh38:21:1:10000:1 REF
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2 CCACAATCATTTTAGGAGAATGGGTTTAAGAAAGGAAAAAAAAAAAAAAGATTTCTGTAT
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3 GCTCTTAAGAGAAAATCTAAAAAATAATGACATGAAAAAGTTGAAAGGAATGGAAAAATA
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4 TGTACCATTAAAAGGAAACCCGACGTATGAATGCCATTATCAGACAAAACAGATTTTTTT
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5 CTTTTTGAGATGGAGTCTCACTCTGTGGCCCAGGCTGGAGTGCAGTGGCACAATCTCTGC
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6 TCACAGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGC
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7 TGGGACTACAGGCACCCACCACCACACCAGGCTAGTATTTGTATTTTTAGTAGAGACGGG
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8 GTTTCATCGTGTTAGCCAGGATGGTCTCAATCTTCTGACCTCGTGATCTGCCCACCTCAG
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9 CCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCAGACAAAACAGATT
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10 TTAAGACAACTAAGAAGTTAACAAGCTGACCCTACAATAAGCATGAAAATTTTGAAAAAG
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11 AATAGGAAAGGAGAACTCACCATAAGAGAAATTGAAACTTGTTATAAAGCTATAGTTGTT
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12 AAAACGGTGTTACTACAGTGGTACATGGACAGATAAATGGACCAATGAAGCAGACCCAGG
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13 CACTGAAAGGAACCTTTTATATGACAGCATGGCACAATCAGTAAGAATAGAGAGGAAATA
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14 GGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCAGGCAGA
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15 TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGTCAACATGGTGAAACCGCGTCTCTACT
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16 AAAAATACAAAAATTAGCTGGTCGTGGTGGCAGGCACCTGTAATCCCAGCTACTCGGGAG
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17 GCTGAGGCAGGAGAATCACTTGAACCCGGCTAGCGGAGGCTGCAGTGAGCCGAGATCACG
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18 CCATTGCACTCCAGCCTAGGCAACAAGAGTGAAACTCCATCACAAAAAAAAAAGAAAAAG
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19 AGTAGACAGGAAATAAATGGTCCAGAATAACTGCCTATCCTTGTGGAGGAGAGGGTGATT
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20 CAAAATTAGGTCCCTTTCCTCACTCTATATGCAAAAAACAAACTTCAAATAAATTATACA
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21 ATTAAATGTGAAAATCAAGACTTTAAAATAAACAATGCAGTAGGCTGCTTTATAATATCA
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22 AGTTAGGGAAGGCTTTCTTAAATTTCATAAACATAAATCATAGAGGAAAAGATGAACTGT
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23 CTACCTTAAAATTAAAGACGATATAAACAAAATTAAAAGGTAAGCCAGACAAAAGAAATA
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24 TTTGTAGTGACAACGGTTTAACTTTCTTTCTTTCTTTTTTTTTTTTTGAGACGGAATCTC
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25 ACTCTGTCACCCAGGCTGGAGTACACTGGTGCAATCTCAGCTCACTGCAACCTCCACCTC
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26 CCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATGACAGGTACGCAC
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27 CACCACACCCAGCTAATTTTTTGTATTTTTAGCAGAGACGGGGTTTCACCATGTTGGCCA
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28 GGCTGGTCTCGAATTCCTGACCTCAGGTGATCCATCTGCCTCAGCCTCCCAAAGTGCTGG
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29 GATTACAGGAGTGAGCCACTGCACCTGGCCCACAAGGGTTTCACTTTCTAAAAATATAAA
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30 GAACTGGCCAGGTGCAATGGCTCACACTTGTAATCCTAGCACTTTGGGAGGGCAAGGAGA
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31 GCAGATCGCTAGAGGCCAGAAGCTGGAGAACAGCCTGGCCAACATGGTGAAACCCCATCT
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32 CTACTTTAAAAATATAAAAATTAGTTGGGTGTGGTGGCACTTGCCTATAATCCCAGCTAC
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33 TTGGCTACTCAGGAGGCCGAGGCAGGGGAATCGCTTGAATCCAGTAGGCAGAGGCTACAG
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34 TGAGCCAAGATCATGCCACTGCACTACAGCTTGGGCAACAGAGTGAGACTTGGTCTCAAA
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35 AAAAAAAAAAATTATATATATATATCTTATATATATACACTATTATATATATACACACAC
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36 ACACACACACACACACACACACACACACACACAATTAATATGAGATGCCCAAAAATCCAA
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37 TTGTAAAAAGGGGCAAAGGTTGTAAACTGGTAATTCATAAAAACAAATGAAGAGATGCTT
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38 ATTGGTACTATATGCTCAGTATTAAGCAAATTAAATGAGATAGGATCGTGCATATTCAAC
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39 CAACAAAATATCTGAATGTCTGAAAATAATAAATGTTAATGAGGGAGTGGAGAAAATGGG
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40 AATGCTCATACTGCTGATAGAGAGTAAACTGGTACAACTATTGTGGCAGCCAATTAATAT
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41 TTAGTAAAGCTGAAGATGCATGGTCCACTGTGGTACAGGCCCTGGAGATATTATCAAATG
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42 TGTACACAAAGAAACACGCACAAGGATATTTTCTGCGATACTGTAATACTCAAAAGCCAA
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43 TGACATCCTCAGTGGTCATCAATAAGAAAATGAATTAATGATGGGATTAATCATATAATG
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44 AAATACTATATAGCAGTTGAAATGAATGTACTCTTTACATGTATCAACATGCTATACATA
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45 AAAAACAATGATGAGCAATAAAAGCAAATTGCAAAAGGATATATATTATGAAACCAATTA
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46 TGTTTAGTTTTAAAACACAGAGAATACTATGGATTGTAGTAAAAAAAAATATAAAATCAT
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47 GAAGAGTAAGGACAGGTACAAACAGGATAGTGGTTCTTCTTGAGAGGAAGGAAATGACAT
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48 AACAAGACCTTCAATGGATGTGCAGCTTTTCCTTTATTTAAACACAAAAGGATCTGAAGG
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49 AAATAAGGAAAAAGGTTGACAGTGGTTACAATTAAATAGTGGCTGTATGTCAACACTCTT
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50 GGTTACAAACAACAGGATCTACACTAGCTAGTTTAAACAAACAGAATAAAATGGCTCACA
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51 AGTCACAGGCGTGGAGGTCAGGACTACGGAGCCCCCAAAAATGCCCATTTTTATACCTTG
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52 GAGCAGCTGCGGGGGAAAAACTGCTAAGCAAAGCCTCCACACCTTGCACCATTACATGGG
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53 ACCTCTGCCACTGCTGCCTTGAAAACCACATCACTGCTCCGTTCAACAAAATGTATCTCA
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54 TACTACTCTTGTCTGCAAAGTACTTGCTTCCAGATTTCACACAGTTATGTCTAATTGGTG
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55 AGCCCATGCTACCTGTCTGAGCCACAGCTGCAAGGAAGGGCAGGAGATTAAATTTCATTC
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56 TTCTACTGGGTAAGGCGAGATCCACAGAGTGGGAAGTTGCCAAAAAGCAGGTGTTCAAAC
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57 AGTGCTAGCTGCCCAAAAAGCACGAAAAGTGCCCACTCAAACAAGAGTTGGTGAAAATAT
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58 TCTCTCTACTTTTCTGTATGCTCAAATATTTCACAATTTTTTTAAAGAAAAAATGTCGAA
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59 GTATGTAAATTCACAAACAACAAAGGGAATGGAAAAAAAATCAATAAACAAGAGACGTCA
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60 ACCAAATTCTAAAAGACAAAAAGCTAAGTGACTAATAAAACACTAGAGAATGTCACCACC
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61 TAGAAAACATGTGGAGGAAGTTCCATCAGAGGCAGCCAACCGGCCCAGCTGGGCCTTAGC
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62 TCAGAGGCAGCAAAAGTTCATAGATGATAGAAGACAGTAGAGGGATTAGTTAAATCTAAA
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63 CTAATTAAAAAGAAAGGAATTAATTAAAGGTCTGTATACAAACTGGTTGAACACTACCCC
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64 ATCTTCAAATATAGAAGGGCCTAAATCCAGGAAGTGCCCCATGCAAAATATTGAAGGGAT
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65 CTTTATTATAAAGTAAGTGAAAGAACAGTCTGGGTAAAACTAGGATAGTCAATTTAGAAA
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66 TCGGTAGCCAAGACAAGACCTCTTCATTCTAGCATTTTAAAAACCCTCATCCTACCAGCC
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67 AGATTTACCTACTTATCCTTAGTGATGCTTATGAGAAGCCAAACCTTCCTCAAACCACAG
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68 AGCTGCCACTCAACCTCCCTACATCCACATCTTCAACTACAAACTGACAGCCAACAAACG
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69 TAAGACATTTGAAAAAAGCCTGAAACATGTAGATGAAAGACTAAGAAAAAAATCTGTCAC
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70 TGGAGAAAAGAGATGATTCAGGGACTAGAAAGTGAATGAAGAAATGAATAAAAATTATAT
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71 TGATATCTTCAGAGAGCTTCATGAAAATACTTCACATCCAGAAAACATGAAAAGGATTCT
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72 ATGAAACAGAAGCAAAAGAGAGCTTTCAGAAATTAAAATATGCTTGACATAATGTGAGTA
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73 AAATATAAATGCAGGAAAAATAATAGAGAAAGGGAAAAAAATACAGAGGACCAATACAGA
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74 CGATGCAAATACAGCTGAAAGGTATTAGAGAAACAAAGAACCTCCAGAGAAAAGAAAGAA
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75 CAAATAAAGTAAAAAAACATAAAAGAGAGATGTCAAAAATTGAAAGGATCGCCTACGTAC
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76 CAAGCAGAATAACTGACTGAAGACCTAGATACAGGTACAGGATTGTCGAATTTTACAACA
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77 CCAAGAATAATAAGATCCTAAGTGTCCAGAGTGTGTTGAGAGAAGGGGATGCAGAGAACA
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78 GGTTATATAAAAAAGGAACAAGAATCAGACTGGCATCAGACCTTTCATTAGCAAAATCAG
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79 ATGCCAGAAAATAACTGAGCTGCTTTCAAAGTTCTAAGAGAAAACTACTTTTCAATCTAG
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80 AATTCTGTATCTAGCTGAATAGTTCATCAAATGTAAGCGCATAACCCACTTTAGACATGC
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81 AATGGCTCACCTCTTAGACATTTTTTCCTAGAAAGGAGCTTAGAGACAAATGCTAGCAAA
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82 ATGAGAAAGTTAATCAAGAAACAGGAAGATATGGACTCTAAGAAAAAGTTGACCTCACCC
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83 AGAAAAAAAAAAAAAAAAATACGGCCTTCAGAGGAAGCCTGTGCACAAGATGCAGAAAAC
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84 TTGCTGACAAAGAAGCAGAAACTTTTTGGCAAAATATTTTTGTAAGACTGATAACCAAGG
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85 CTTACTCAAGGTGTGGGGAAACAGGCACTCTTAGACAGTTATTGGGAGTAACACTTGGCA
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86 AAACCTTTGGGAAGCCAGCATCTGGTAGCACCTGACAGTAATTCCACTGCCAGAAATCTA
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87 TTTCTACAGAATTATTTATACGTGAGGCAACATAGAGTAGAACATAAGAGCATGTGAGTG
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88 AAACTACCTCCGTTCAAATTCCCACTTTACCACTTTCAAGCTCTATGCTGTTTCCTCATT
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89 TAAAAAATAGAAACATCTTCTCAACAGGTCACTATGAGGATTATAGAAAAGGTTCCACAC
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90 GTGATGGGCTTCGCACAAGACCCAGCACATGATAAATACTCAGTTAATATTACTTATCTA
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91 CAAACATTTGCCATTTTTGCACAAGGATGTTTACTGTGCCACTGTTCGGCAAAAAACGCA
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92 AGCAAGTATAGTATGGTCCTATTTATGTTTTTTAGAAATTACATTTATATTTGTATGTAT
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93 CTGCCTAGATCTGTAGGAAAAAATAGAGAAAACATGCTAAAGTGTTGCATCCATGGAGCA
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94 GGAAGGGAGTGACCTGTTTTTGTACAGTTTTTACTTAAGCAACATGAAGTGTTTCATACT
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95 TTAGAGAAAAGAAAAAGTAAAGATCACTATCAATCTTGGGGAGAAAGGGTTAATCTGTAT
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96 AAGCACACACAAACATTATATTTAAAACATTTATTTTATTATACATATTTAAATTTTAGA
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97 AAGTTATTAGGTAGATGTACATTCCTCTGTTGCTTTACTTTGATCTTCAGTTACCTGTAA
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98 AAACATGAATAGCTTTACTTTCCTAATAAACACTTTCAGTTTTACCCTTCACCCACCATT
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99 TTAAATCATTCCACAGCCCTCTTATAATGACCCTTTATCTTTCCCCTTAAATAGTAGAAT
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100 AGAAAGTTAGGTAAGAAGAAAGATTTAAAGGCCAAGTAACCAATATAAATTATCAGGTAA
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101 AGAACAATAATTCCATTCAAAAATATAATCTAAGGCATATTATACCTAGGCTTCTCAAGT
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102 TGGCCATTTTACTTTTCAGCCGTAAAACAAAATCATTAGTGTAAGAAAAAACACCTGAAG
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103 TGCTGTAACAAGCTATTTTAAATCAGTTTATTTTCTTTTGGAGTATAATTCCATTTAGAA
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104 TAGAACATATTACAGATTTAGTCTAAATAGATATCTCTATGTCCCTATTTCTATTCTGTG
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105 TCACTCAGACTCATCAAACAGACATGGCTAAATCTGAATTCAACACCCCAAAACCTGTCC
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106 TACCTGCATCATCTATCTTGGTAAAGGGCTCCACCCAGATACCTAAGGACAGCATTCAAG
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107 AATTCACTCTCTTCTTCCTACCTGCATATTCCATCAACAGTCCTACTAATTCAGCCTAAG
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108 TTAACTCTCACAGTCATTCTCCCTATCGCGGCTGAACTTTAGGACCTCATTCTCTTCTAT
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109 CCCCCTAACAGAACTCTTGGCTTAAGTCACAGCTATATCCCATGCTACCCCTAGAATGAG
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110 CTTTTAAACAAGAATAGCTGATCAACAGGTCACTTCCCTACTCAAAATTCTCCAGTTACT
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111 CTCTAGCATCTCAGTGGGGTGGAGGAGGAAAGTCAGGAATGCAAGTTCCACAACACGGGA
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112 CACAAGCCCCTCATATTCTGTTTTTGGACTGACTCTTTACCTATCCTACATGTGACCTGT
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113 ACATTCAAATTCATCTTACATTCATCATGTTCTCTATGTAGGCAAGTGACTTCCTCTGAG
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114 ATAACCTCCAACCCATTTTCCAACAGATTATCTGCATGGTCCACTTTTATTCACCCTTTA
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115 AAATCAGCTTAAGAGACTCCAATTCCTGGAAGCCTTCCTTAAGCAACTCCCCAGCTTGGT
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116 CTGAGTCCTCTTCTTTATGCCAGAGCCCCACATGTACACCTGAACTGTCTGCTTATAAGT
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117 CTAATTATCCAATCAACATTACTTCCCTGAGGCAGCAAGTAAATTTTGTGCATTTTTTTG
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118 TACCTCCAGACCATAACAGTACCTGGCACACAATAAACAATCAGTAAGTCTGTGTTGCAT
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119 CAATGAACCACGTTTAATCTAATCCCTTCAGAAAAGCAAAATGGACAGTAGAAAAAAGCA
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120 ACTAAACCAGAATAAATGTTTGAAAAAATATGTATTGACTAACATCACTAGATATTCTAG
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121 GTAAGACACTGTCTCTGCCGTTTTTCTACATTTTTCATTCCTTTAAAGTGTTCAGTTACT
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122 ACTGCTTCTTTAATTTTCCAAACTATTTCTTTAATATTCTTTAGCTTTTTAAATTTTTTT
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123 TAATTTTACTTAACTCCAAGTAAACATGCTGAACATTTTTTCTTTAGTTTCTTCATCTAA
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124 AATGATCACTGTGACCAACTAAAAAGAGAAAATTACTCCATCCATTCAAAGGTAATTTCT
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125 TCTCATGAGAAAAAAAATTATATAACCCTTACTCAAGAACATTATGGTGAAGTCCCTAAA
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126 CAATAATTCCTATCTACATAGTCATTAATAAAGACTAGGTTTATATATCATTATGAAAAA
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127 TTGTCAATAAATATTTCTTGGGTAACCCCTTCATGTGCTAATGTTGTGTTCAAAATTTGG
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128 GCTTACACAAATATAACAAATCCTGAAAGGCTTAACAGACAGAAAATAAATGTACTGGCA
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129 AAGAAAACAATCAAAAAATAGTATGTGGACATATACAATCAAGCACAAACTTATATGAAT
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130 AATTATTTGTTAGAGATTACTCTGAGACTGTTCCATGGAGGAGGTACGACTCAGGCGAGG
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131 TAGTGAAGAATGACTGCGTAGTAAATAGAAGGAGAATGGGAAATGGAGTCTAGAAAGAAA
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132 AACTATCATGAAGAAATAAGCAAACTTGAAAATAAGTTTAATGTGTGATGCTTAATGTGC
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133 CTGCAAGCTTAACCAGTGTTTGTGGCATTGTGGGAAATTAGGATAAGGAGGAAGTCCTAA
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134 TGAGGACAGATTACACAGGACAGCTATCAGATAACCTAAGTAAAAGAGGCACACTTAGCC
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135 TATGAAATAGGAAACAGGAATAGTTGTGGTCAAGAAATACAATCACCCGGGCCGGGCGCG
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136 GTGGCTCACGCCTGTAATCCCAGCACCTTGGGAGGCTGAGGGGGGTGGATCACGAGGTCA
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137 GGAGATCGAGACCATCCTGGCTAACACGGTAAAACCCTGTCTCTACTAAAAATACAAAAA
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138 AATTAGTTGGACGTAGTGGTGGGCACCCATAGTCCCAGCTACTTGGGAGGCTGAGGCACG
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139 AGAATCGCTTGAGCCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGCACTC
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140 CAGCCTGGGAGACAGAACAAGACTCTGTCTCAAAAAAAAAAAGAAAAGAAATACTATCAT
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141 TCCTACTCATTAAGTCTAAATGCTAATGACAAAGAATAAACTACAAAAACACAAACATTC
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142 AAATCTGGTTTTTCAGGACATTAGGATATTTGCACATTTACTGTTAATGGCTAAAGGCGG
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143 CTTTAAAATACACCTGACAAATCTTAATCCTCTAAATATTCATTAAGTTTACAAAATAAA
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144 TCCTAAGACCTAACTGATACCATTACAACTATTAAGAACTATTACTATTACATAGTAATA
c7dcf2635d04 Uploaded
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145 TTCTTATTTCTCTTCAAGTTCTACAATATCATTTTCACGATATTAACAAATAAAATCAAA
c7dcf2635d04 Uploaded
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146 AGAGAACTGCCAAGTTACAACTTTACCCTTACCAACACACTAGTGAACAATCACAACACT
c7dcf2635d04 Uploaded
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147 GCTTTGACTATTGAGACAACTTACTTTTTTCCTTTCTCTTTGTTTCTTTCATTTTTCCCC
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148 CCTTTGGTTGTTATTGGTTAATTTTGATGAATTTCTTTATAGAAGAGTACTCAATAGCTG
c7dcf2635d04 Uploaded
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149 TCAAAAACACTTACCATTTTCCGAGATCTTTCCAATAGCTTATCCCATATTGTAAAATGT
c7dcf2635d04 Uploaded
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150 GCCTTGAAAAGAAAAGATTTGCGATGAACTAAATGAAGCAGTAATGTCAAAGTAAAAAGG
c7dcf2635d04 Uploaded
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151 ACAGAGTCTTTATATAGCTTTTAGAACAAAATAAATAAAAAGCTAGGCAGTACTAATTTA
c7dcf2635d04 Uploaded
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152 GATAAGTGGTTATAAAAGTGGATCATAGTAGCAAAAAAAGGTGCTACATGGGGATAGCTG
c7dcf2635d04 Uploaded
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153 CTTTTTTGCTTTCTTCAATCGCATGAACCCGGGAGGCAGAGGTTGCAGTGAGCATTTAAG
c7dcf2635d04 Uploaded
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154 AAAAAAACGCTTAAGGATTGAACGTGCCCTTCTTTCACTTTTGCCCATCTTAATCATTTC
c7dcf2635d04 Uploaded
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155 CATCATAGAAAGCATTTCTTCTAATAGGAAGCAAAAATCTGCCCTACTTTCCCATAGACT
c7dcf2635d04 Uploaded
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156 GTGGTTCAATCCTTAAACAGCCAGTTTCAACATTCTAGAAGTCATTCTTCAAATCATAAG
c7dcf2635d04 Uploaded
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157 CAATCACAAGAAGACAGTCATTAAAAACCAACTGTGACATCTTCACACTGAAATGGCAGA
c7dcf2635d04 Uploaded
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158 AGCAGAGGATTCATCAAGTTACCCTAAAGAATAAGTAAAACCTAACAAAGACAATAGTAA
c7dcf2635d04 Uploaded
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159 ATTTTTTTTTTTTTTGAAATGGAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGC
c7dcf2635d04 Uploaded
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160 GATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTC
c7dcf2635d04 Uploaded
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161 CCAAGACAATAGTAAAATTTAAACTCAATTTCCTTAGTCCATAACAACCTCCTGTAGCAG
c7dcf2635d04 Uploaded
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162 AGGATTATCAGAATGCATTAAAGAAAACTGTGCAAAGTGTATCATGACCACATCAATTTT
c7dcf2635d04 Uploaded
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163 ATTAGGTCAACTGAAAGTGGTAACAAGACATATGGGCAGGCCAGTGACTACTCCACACTG
c7dcf2635d04 Uploaded
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164 AATGAGCTCATAAAATCTATAATAAAAGGTAAAATTAATAAATATCAACATACAAACCCT
c7dcf2635d04 Uploaded
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165 TCCAGGGAAAGAGCTGACTGGTATGTTTAAAGGGAAAACCATGCCTGACTCAGGCGGAAT
c7dcf2635d04 Uploaded
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166 GAACTGCTGGTGCAGAGACCTTAAGCTGTGGCTGGAATATAGTGAGTGAGGAAAGGAGTG
c7dcf2635d04 Uploaded
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167 GTGTTAGATAAAGTCAGAGAAGCAGGCAGGGACCAGATAATGCAGGGCTTTGTGAGACAG
c7dcf2635d04 Uploaded
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168 GGTAAAGAGTTGGGATTTGTTCAAGGGAAGCCATTGGAAA