diff data_manager/data_manager_vep_cache_download.xml @ 7:7890790d2afd draft

Fully working now and improved several things

--- a/data_manager/data_manager_vep_cache_download.xml	Mon Feb 28 14:42:50 2022 +0000
+++ b/data_manager/data_manager_vep_cache_download.xml	Tue Mar 01 18:12:26 2022 +0000
@@ -11,27 +11,26 @@
             label="DBKEY of genome that the VEP cache data is for"
             help="" />
         <param name="url" type="text" value="http://ftp.ensembl.org/pub/release-105/variation/indexed_vep_cache/"
-            label="FTP root url for VEP cache files" help=""/>
-        <param name="file_name" type="text" label="File name of cache file to be downloaded from root url." help="E.g. homo_sapiens_vep_105_GRCh38.tar.gz"/>
-        <param name="display_name" type="text" label="Display name used in data-selection dropdowns." help="E.g. Homo sapiens hg38 (V105)"/>
+            label="FTP root url for VEP cache files" help="Release number should be equal to desired VEP version"/>
+        <param name="file_name" type="text" label="File name of cache file to be downloaded from root url" help="E.g. homo_sapiens_vep_105_GRCh38.tar.gz"/>
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json"/>
     </outputs>
     <tests>
     <test>
-        <param name="dbkey" value="ce11"/>
+        <param name="dbkey" value="ci3"/>
         <param name="url" value="http://ftp.ensembl.org/pub/release-105/variation/indexed_vep_cache/"/>
-        <param name="file_name" value="caenorhabditis_elegans_vep_105_WBcel235.tar.gz"/>
-        <param name="display_name" value="C. elegans ce11 (V105)"/>
+        <param name="file_name" value="ciona_intestinalis_refseq_vep_105_KH.tar.gz"/>
         <output name="out_file" file="from_test-meta.data_manager.json"/>
         </test>
     </tests>
     <help>
 This tool downloads given versions of VEP cache annotation files and makes them available to Ensembl VEP in Galaxy via the
-"vep_versioned_caches" data table. You should use the indexed version of the cache files and it is strongly recommended to 
-use the cache files which version number matches the VEP version number. Note that for most genomes there are three versions 
-of cache data available: default, refseq and merged (combining the former two). Choose the one suitable for your usage. 
+"vep_versioned_annotation_cache" data table. You should use the indexed version of the cache files and it is strongly 
+recommended to use the cache files which version number matches the VEP version number. Note that for most genomes there 
+are three versions of cache data available: default, refseq and merged (combining the former two). Choose the one suitable 
+for your usage. 
 
 A general introduction to the VEP cache and download links can be found on the official website:
 https://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html