# HG changeset patch
# User serranop
# Date 1379174229 14400
# Node ID aa3acde7621c557987b9aedb687d79202a8db0ce
# Parent  26ab91de759337a137c7ad8a4d7c3b0adfddcdd6
Uploaded

diff -r 26ab91de7593 -r aa3acde7621c usearch_fastq_mergepairs.xml
--- a/usearch_fastq_mergepairs.xml	Sat Sep 14 11:55:44 2013 -0400
+++ b/usearch_fastq_mergepairs.xml	Sat Sep 14 11:57:09 2013 -0400
@@ -29,7 +29,11 @@
 -fastq_qmin $qmin
 -fastq_qmax $qmax
 -fastq_qmaxout $qmaxout
--fastqout $output
+#if $output_format.format == "fastq"
+    -fastqout $output
+#else
+    -fastaout $output
+#end if
     </command>
     <inputs>
         <!-- INPUT OPTIONS -->
@@ -59,7 +63,7 @@
         </conditional>
    </inputs>
     <outputs>
-        <data name="output" format="fastq" label="Merge result" />
+        <data name="output" format="${output_format.format}" label="Merge result" />
     </outputs>
     <tests>
         <test>