# HG changeset patch # User serranop # Date 1379176879 14400 # Node ID 38e5953ca25f9e47587bcdf3219c1e8bb7fb6de3 # Parent 7794d10e6e2985ea2fc60d12889c72c2fbcabaf0 Uploaded diff -r 7794d10e6e29 -r 38e5953ca25f usearch_fastq_mergepairs.xml --- a/usearch_fastq_mergepairs.xml Sat Sep 14 12:33:28 2013 -0400 +++ b/usearch_fastq_mergepairs.xml Sat Sep 14 12:41:19 2013 -0400 @@ -1,4 +1,4 @@ - + merging of paired reads usearch -version usearch_wrapper.sh @@ -29,7 +29,7 @@ -fastq_qmin $qmin -fastq_qmax $qmax -fastq_qmaxout $qmaxout -#if $output_format.format == "fastq" +#if $cond_format.out_format == "fastq" -fastqout $output #else -fastaout $output @@ -51,10 +51,8 @@ - - - - + + @@ -65,7 +63,7 @@ - + @@ -82,9 +80,10 @@ Performs merging of paired reads. -The FASTQ filename for the forward reads is specified by the -fastq_mergepairs option, and the reverse read filename is specified by the -reverse option. Output files are specified by -fastqout (for FASTQ) and / or -fastaout (for FASTA). - -Forward and reverse must be in 1:1 correspondence and must appear in the same order in both files. The labels for the forward and reverse read in a given pair must be identical except for a single position where a '1' appears in the forward read label and a '2' appears in the reverse read label. +Forward and reverse must be in 1:1 correspondence and must appear in the same +order in both files. The labels for the forward and reverse read in a given +pair must be identical except for a single position where a '1' appears in the +forward read label and a '2' appears in the reverse read label. -----