# HG changeset patch
# User scottx611x
# Date 1532626214 14400
# Node ID b56dd29fd7999d16904fae6560632295a957b862
# Parent  949cb33a2d4dbec7e9da41aeec31f3b8947ad4b2
planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

diff -r 949cb33a2d4d -r b56dd29fd799 qualimap_bamqc.xml
--- a/qualimap_bamqc.xml	Thu Jul 26 13:17:53 2018 -0400
+++ b/qualimap_bamqc.xml	Thu Jul 26 13:30:14 2018 -0400
@@ -20,15 +20,18 @@
         <param name="mem_size" type="text" value="8G" format="txt" label="Java memory size (default Gig)" help="Specify the size of memory to allocate. (Default 8 Gig)"/>
     </inputs>
     <outputs>
-        <data format="txt" name="genome_coverage" label="Qualimap BamQC coverage report">
+        <data format="txt" name="genome_coverage" label="Qualimap BamQC Coverage Report">
           <discover_datasets visible="true" ext="txt" assign_primary_output="true"/>
         </data>
-        <data format="txt" name="genome_results" label="Qualimap BamQC results">
+        <data format="txt" name="genome_results" label="Qualimap BamQC Results">
           <discover_datasets pattern="genome_results*" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>
         </data>
-        <data format="html" name="qualimap_html_results" label="Qualimap BamQC HTML report">
+        <data format="html" name="qualimap_html_results" label="Qualimap BamQC HTML Report">
           <discover_datasets pattern="qualimapReport*" visible="true" ext="html" directory="qualimap_results" assign_primary_output="true"/>
         </data>
+        <data format="txt" name="qualimap_raw_data_results" label="Qualimap Raw Data Results">
+          <discover_datasets visible="true" ext="txt" directory="qualimap_results/raw_data_qualimapReport" assign_primary_output="true"/>
+        </data>
     </outputs>
    
     <tests>