# HG changeset patch
# User scottx611x
# Date 1532705809 14400
# Node ID 6b6e03e84a427e2c575ca0d4cc9a206c340d8ebe
# Parent  407b6a65c867af05f90b583d805db1d43377a58c
planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

diff -r 407b6a65c867 -r 6b6e03e84a42 qualimap_bamqc.py
--- a/qualimap_bamqc.py	Fri Jul 27 11:28:26 2018 -0400
+++ b/qualimap_bamqc.py	Fri Jul 27 11:36:49 2018 -0400
@@ -32,6 +32,7 @@
     parser.add_argument('--java_mem_size')
 
     args = parser.parse_args()
+    print(args)
 
     output_dir = os.path.dirname(args.out_genome_file)
 
@@ -51,7 +52,7 @@
     )
 
     [
-        shutil.move(os.path.join(output_dir, file_name), file_name)
+        shutil.move(file_name, os.path.join(output_dir, file_name))
         for file_name in [
             "genome_results.txt",
             "qualimapReport.html",