# HG changeset patch # User scottx611x # Date 1532621652 14400 # Node ID 4e5e0a116434fa3d3f4f9c58d3b371005dcef648 # Parent e14c864ee2b0aaeb89761d0d12b5d62015f7a102 planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty diff -r e14c864ee2b0 -r 4e5e0a116434 qualimap_bamqc.py --- a/qualimap_bamqc.py Thu Jul 26 11:44:20 2018 -0400 +++ b/qualimap_bamqc.py Thu Jul 26 12:14:12 2018 -0400 @@ -29,11 +29,11 @@ ) parser.add_argument('--input_file') parser.add_argument('--out_genome_file', default="genome_coverage.txt") - parser.add_argument('--out_dir') + parser.add_argument('--out_dir', default="qualimap_results") parser.add_argument('--java_mem_size', default="8G") args = parser.parse_args() - + qualimap_bamqc( args.input_file, args.out_genome_file, diff -r e14c864ee2b0 -r 4e5e0a116434 qualimap_bamqc.xml --- a/qualimap_bamqc.xml Thu Jul 26 11:44:20 2018 -0400 +++ b/qualimap_bamqc.xml Thu Jul 26 12:14:12 2018 -0400 @@ -21,13 +21,13 @@ - + - + - +