# HG changeset patch
# User scottx611x
# Date 1532626966 14400
# Node ID 318d564348f5c8444bd6fa065b6ed8c38e4a98ce
# Parent  b56dd29fd7999d16904fae6560632295a957b862
planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

diff -r b56dd29fd799 -r 318d564348f5 qualimap_bamqc.xml
--- a/qualimap_bamqc.xml	Thu Jul 26 13:30:14 2018 -0400
+++ b/qualimap_bamqc.xml	Thu Jul 26 13:42:46 2018 -0400
@@ -24,13 +24,13 @@
           <discover_datasets visible="true" ext="txt" assign_primary_output="true"/>
         </data>
         <data format="txt" name="genome_results" label="Qualimap BamQC Results">
-          <discover_datasets pattern="genome_results*" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>
+          <discover_datasets pattern="genome_results.txt" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>
         </data>
         <data format="html" name="qualimap_html_results" label="Qualimap BamQC HTML Report">
-          <discover_datasets pattern="qualimapReport*" visible="true" ext="html" directory="qualimap_results" assign_primary_output="true"/>
+          <discover_datasets pattern="qualimapReport.html" visible="true" ext="html" directory="qualimap_results" assign_primary_output="true"/>
         </data>
         <data format="txt" name="qualimap_raw_data_results" label="Qualimap Raw Data Results">
-          <discover_datasets visible="true" ext="txt" directory="qualimap_results/raw_data_qualimapReport" assign_primary_output="true"/>
+          <discover_datasets pattern="*.txt" visible="true" ext="txt" directory="qualimap_results" recurse="true" assign_primary_output="true"/>
         </data>
     </outputs>