# HG changeset patch
# User scottx611x
# Date 1532622936 14400
# Node ID 23bed05af0527e977bdb80b4bff0ab7927942a06
# Parent  993e227aff2b615b237a17c86db33330f2f6465c
planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

diff -r 993e227aff2b -r 23bed05af052 qualimap_bamqc.xml
--- a/qualimap_bamqc.xml	Thu Jul 26 12:21:23 2018 -0400
+++ b/qualimap_bamqc.xml	Thu Jul 26 12:35:36 2018 -0400
@@ -24,10 +24,10 @@
           <discover_datasets visible="true" ext="txt" assign_primary_output="true"/>
         </data>
         <data format="txt" name="genome_results" label="Qualimap BamQC results">
-          <discover_datasets pattern="(?P&lt;genome_results&gt;*)" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>
+          <discover_datasets pattern="(?P&lt;genome_results&gt;*)" visible="true" recurse="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>
         </data>
         <data format="html" name="qualimap_html_results" label="Qualimap BamQC HTML report">
-          <discover_datasets pattern="(?P&lt;qualimapReport&gt;*)" visible="true" ext="html" directory="qualimap_results" assign_primary_output="true"/>
+          <discover_datasets pattern="(?P&lt;qualimapReport&gt;*)" visible="true" recurse="true" ext="html" directory="qualimap_results" assign_primary_output="true"/>
         </data>
     </outputs>