# HG changeset patch
# User scottx611x
# Date 1532630935 14400
# Node ID 1d2705d9bdd2b44c26d816132c5bf08bb7c4bf49
# Parent  d4d49c617455d8fd523e244f45d6563c8fc6f155
planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

diff -r d4d49c617455 -r 1d2705d9bdd2 qualimap_bamqc.xml
--- a/qualimap_bamqc.xml	Thu Jul 26 14:31:15 2018 -0400
+++ b/qualimap_bamqc.xml	Thu Jul 26 14:48:55 2018 -0400
@@ -21,15 +21,15 @@
     </inputs>
     <outputs>
         <data format="txt" name="genome_coverage" label="Qualimap BamQC Coverage Report">
-          <discover_datasets visible="true" ext="txt" assign_primary_output="true"/>
+          <discover_datasets visible="true" ext="txt"/>
         </data>
-        <data name="genome_results" label="Qualimap BamQC Results">
-          <discover_datasets pattern="genome_results.txt" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>
+        <data format="txt" name="genome_results" label="Qualimap BamQC Results">
+          <discover_datasets pattern="genome_results.txt" visible="true" ext="txt" directory="qualimap_results"/>
         </data>
-        <data name="qualimap_html_results" label="Qualimap BamQC HTML Report">
-          <discover_datasets pattern="qualimapReport.html" visible="true" ext="html" directory="qualimap_results" assign_primary_output="true"/>
+        <data format="html" name="qualimap_html_results" label="Qualimap BamQC HTML Report">
+          <discover_datasets pattern="qualimapReport.html" visible="true" ext="html" directory="qualimap_results"/>
         </data>
-        <data name="qualimap_raw_data_results" label="Qualimap Raw Data Results">
+        <data format="txt" name="qualimap_raw_data_results" label="Qualimap Raw Data Results">
           <discover_datasets pattern="__designation_and_ext__" visible="true" ext="txt" directory="qualimap_results/raw_data_qualimapReport"/>
         </data>
     </outputs>