Mercurial > repos > scottx611x > qualimap2_bamqc

diff qualimap_bamqc.py @ 38:6b6e03e84a42 draft

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planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty
author scottx611x
date Fri, 27 Jul 2018 11:36:49 -0400
parents 407b6a65c867
children 2284e9b4c6b2
line wrap: on
line diff
--- a/qualimap_bamqc.py	Fri Jul 27 11:28:26 2018 -0400
+++ b/qualimap_bamqc.py	Fri Jul 27 11:36:49 2018 -0400
@@ -32,6 +32,7 @@
     parser.add_argument('--java_mem_size')
 
     args = parser.parse_args()
+    print(args)
 
     output_dir = os.path.dirname(args.out_genome_file)
 
@@ -51,7 +52,7 @@
     )
 
     [
-        shutil.move(os.path.join(output_dir, file_name), file_name)
+        shutil.move(file_name, os.path.join(output_dir, file_name))
         for file_name in [
             "genome_results.txt",
             "qualimapReport.html",